2026
Pasparakis, C., Spooner, Z. T., Landis, W. G., Brander, S. M., Elser, S. R., Coffin, S., Nicklisch, S. C. T., Tangri, N., O’Donnell, M. J., Shapiro, K., Gjeltema, J., Lang, J., Miller, E. L., Rochman, C., Nance, A., & Segarra, A. (2026). From sources to solutions: The San Francisco Bay-Delta system as a microcosm for microplastic science, ACS ES&T Water. Accepted
L. Cominassi, G.S. Molinari, A. Chandler, S.D.M. Chinthaka, K.E. Huff Hartz, G.W. Whitledge, R.E. Connon, M.J. Lydy, A. Segarra. Environmentally relevant body residues of current-use and legacy pesticide mixtures induce behavioral changes in Juvenile Chinook Salmon, Environmental Pollution, Volume 400, 2026, 128195, ISSN 0269-7491, https://doi.org/10.1016/j.envpol.2026.128195.
Cristina G.B. La, Kara E. Huff Hartz, Nick M. Hettel, Giovanni S. Molinari, Emerson Feddor, Shawn Acuña, Jacob Stagg, Amelie Segarra, Michael J. Lydy. Defining the risks of contaminant exposure to pelagic species in a shipping channel, Environmental Pollution, Volume 409, 2026, 129095, ISSN 0269-7491, https://doi.org/10.1016/j.envpol.2026.129095
Nicholas L. Hudson, Garfield T. Kwan, Brittany E. Davis, Amélie Segarra, Florian Mauduit, Anna E. Steel, Dennis E. Cocherell, Trishelle L. Tempel, Kristen Kilaghbian, Nathalie Negrete, and Nann A. Fangue. 2026. Evaluating stress recovery and gill morphology during experimental supplementation of an endangered fish species. Canadian Journal of Fisheries and Aquatic Sciences. 83: 1-19. https://doi.org/10.1139/cjfas-2024-0390
Hadis Miraly, S.D.M. Chinthaka, Kara E.Huff Hartz, Jacob Stagg, Shawn Acuña, Gregory Whitledge, Louise Cominassi, Amelie Segarra, Nann A. Fangue, Richard E. Connon, Michael J. Lydy.
Tracking pesticide accumulation in juvenile Chinook Salmon during outmigration through the Sacramento-San Joaquin River Delta, Environmental Pollution, Volume 402, 2026, 128347, ISSN 0269-7491, https://doi.org/10.1016/j.envpol.2026.128347.
2025
Huff Hartz K.E; Knaub K.J; Cominassi L; Molinari G.S; Power S; Arkles M; Chinthaka S.D.M; Chandler A; Haninullah-Al-Mamun Md; Whiteledge G; Segarra A; Connon R.E, Acuña S, Lydy M.J. Development of a fipronil insecticide response spectrum model for juvenile Chinook salmon (Oncorhynchus tshawytscha). Environmental Pollution, 385: 127122. https://doi.org/10.1016/j.envpol.2025.127122
Huff Harzt K.E; Arkles M; Knaub K.K; Power S.D; Molinari G.S; Chinthaka S.D.M; Whitledge G; Segarra A; Connon R.E; Acuna S; Lydy M.J. Using a critical body residue approach to assess the acute toxicity of a pesticide mixture to juvenile Chinook salmon (Oncorhynchus tshawytscha). Environ Pollut. https://doi.org/10.1016/j.envpol.2025.126709
Cominassi L; Segarra A; Chandler A; Habibullah-Al-Mamun M; Knaub K; Huff Hartz K; Mauduit F; Fangue N; Whitledge G; Lydy M J.; Connon RE. Sub-lethal exposures to bifenthrin impact stress responses and behavior of juvenile Chinook Salmon, Environmental Toxicology and Chemistry. DOI: 10.1093/etojnl/vgaf029
Knaub K, Habibullah-Al-Mamun M, Huff Hartz KE, Whitledge G, Cominassi L, Chandler A, Arkles M, Reeve J, Segarra A, Connon RE, Lydy MJ. Development of a Response Spectrum Model for Bifenthrin in Juvenile Chinook Salmon (Oncorhynchus tshawytscha). Environ Pollut. DOI: 10.1016/j.envpol.2025.126070
2024
Hutton S; Siddiqui S; Pedersen E; Markgraf C; Segarra A; Hladik M; Connon R; Brander, S.M. Multigenerational, indirect exposure to pyrethroids demonstrates potential compensatory response and reduced toxicity at higher salinity in estuarine fish, Environmental Science & Technology. DOI: 10.1021/acs.est.3c06234
Huff Hartz K; Knaub K; Al-Mamun MdH; Connon R; Whitledge G; Segarra A; Lydy M. Using an internal body residue approach to assess acute pesticide toxicity in juvenile Chinook salmon (Oncorhynchus tshawytscha), Environmental Pollution. 10.1016/j.envpol.2024.123364
2023
Mauduit F*, Segarra A*, Sherman JR., Hladik M., Wong L., Young T., Lewis LS., Hung T-C., Fangue NA., Connon RE. Bifenthrin, a ubiquitous contaminant, impairs the development and behavior of the threatened Longfin Smelt during early life stages. Environmental Science & Technology, 57(26): 9580–9591. (* Equal contribution) View this Article
Hutton SJ, Siddiqui S, Pedersen E.I, Markgraf C.Y, Segarra A., Hladik M.L, Connon R.E, Brander S.M.
(2023) Comparative behavioral ecotoxicology of Inland Silverside larvae exposed to pyrethroids across a
salinity gradient. Science of the Total Environment 857(3): 159398.
2022
Mauduit F, Segarra A, Mandic M, Todgham A, Baerwald M, Schreier A.D., Fangue N.A, Connon R.E.
(2022) Contributions of pathogen infection to outmigrating juvenile Chinook salmon health and
physiological performance. Conservation Physiology. 10. 10.1093/conphys/coab102.
Gille D.A, Barney B.T, Segarra A, Baerwald M.R, Schreier A.D, and Connon R.E. (2022) Investigation of
molecular pathogen screening assays for use in delta smelt. San Francisco Estuary and Watershed Science
(20:1).
2021
Segarra A, Mauduit F, Amer NR, Biefel F, Hladik ML, Connon RE, Brander SM (2021). Salinity changes
the dynamics of pyrethroid toxicity in terms of behavioral effects on newly hatched Delta Smelt larvae.
Toxics 1076383.
Derby AP, Fuller NW, Huff Hartz KE, Segarra A, Connon RE, Brander SM, Poynton HC, Lydy MJ (2021).
Trophic transfer, bioaccumulation, and transcript omit effects of permethrin in Inland silversides, Menidia
beryllina, under future climate scenarios. Environmental Pollution.
Leprêtre M, Faury N, Segarra A, Claverol S, Degremont L, Palos Ladeiro M, Armengaud J, Renault T,
Morga B (2021). Proteomic analysis of virus-host interactions: How do two families of oysters exhibit
contrasted susceptibility to ostreid herpesvirus 1 (OsHV-1) infection? Front. Immunol. 11:621994.
2017
Lafont M, Petton B, Vergnes A, Pauletto M, Segarra A, Gourbal B, Montagnani C (2017). Long-lasting
antiviral innate immune priming in the Lophotrochozoan Pacific oyster, Crassostrea gigas. Scientific
Reports, 7: 13143.
Pauletto M*, Segarra A*, Montagnani C, Quillien V, Faury N, Le Grand J, Miner P, Petton B, Labreuche
Y, Fleury E, Fabioux C, Bargelloni L, Renault T, Huvet A (2017). Long dsRNAs promote an anti-viral
response in oyster emphazing the need of new reverse genetics tool development in marine mollusks for
assessing immune gene function. Journal of Experimental Biology, 220, 3671-3685. *Equal contribution.
2016
Martenot C, Segarra A, Baillon L, Faury N, Houssin M, Renault T (2016). In situ localization and tissue
distribution of ostreid herpesvirus 1 proteins in infected Pacific oyster, Crassostrea gigas. Journal of
Invertebrate Pathology 136:124-135.
Segarra A, Baillon L, Faury N, Tourbiez D, Renault T (2016). Detection and distribution of ostreid 1
herpesvirus 1 in experimentally infected Pacific oyster spat. Journal of Invertebrate Pathology, 133:59-65.
2015
Moreau P, Moreau K, Segarra A, Tourbiez D, Travers M-A, Rubinsztein D and Renault T (2015). Autophagy
plays an important role in protecting Pacific oysters from OsHV-1 and Vibrio aestuarianus infections.
Autophagy, 11(3), 516-526.
Corbeil S, Faury N, Segarra A, Renault T (2015). Development of an in-situ hybridization assay for
detecting ostreid herpesvirus type 1 mRNAs in the Pacific oyster, Crassostrea gigas. Journal of Virological
Methods, 211, 43-50.
Amelie Segarra publications as Grad- and Undergraduate Student
2014
Segarra A, Baillon L, Bourgougnon N, Lionel D, Benabdelmouna A, Tourbiez D, Renault T (2014). Ostreid
herpesvirus type 1 replication and host response in adult Pacific oysters, Crassostrea gigas. BMCVeterinary
Research, 45:103.
Segarra A, Mauduit F, Dégremont L, Faury N, Haffner P, Pépin JF, Tourbiez D, Trancart S, Travers A,
Renault T (2014). Dual Transcriptomics of Virus-host interactions: comparing two Pacific oyster families
presenting different levels of susceptibility to ostreid herpesvirus 1. BMC Genomics 15(580), 1-13.
Segarra A, Faury N, Pépin JF, Renault T (2014). Transcriptomic study of 39 ostreid herpesvirus 1 genes
during an experimental infection. Journal of Invertebrate Pathology, 119, 5-11.
Renault T, Tchaleu G, Faury N, Moreau P, Segarra A, Barbosa Solomieu V, Lapègue S (2014). Genotyping
of a microsatellite locus to differentiate clinical Ostreid herpesvirus 1 specimens. Veterinary Research, 45:3.
2012
Renault T, Moreau P, Faury N, Pepin JF, Segarra A, Webb S (2012). Analysis of Clinical Ostreid
Herpesvirus 1 (Malacoherpesviridae) Specimens by Sequencing Amplified Fragments from Three Virus
Genome Areas. Journal of Virology, 86(10), 5942-5947.
2011
Morga B, Arzul I, Faury N, Segarra A, Chollet B, Renault T (2011). Molecular responses of Ostrea edulis
hemocytes to an in vitro infection with Bonamia ostreae. Developmental and Comparative Immunology,
35(3), 323-333.
2010
Segarra A, Pepin JF, Arzul I, Morga B, Faury N, Renault T (2010). Detection and description of a particular
Ostreid herpesvirus 1 genotype associated with massive mortality outbreaks of Pacific oysters, Crassostrea
gigas, in France in 2008. Virus Research, 153(1), 92-99